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Neural Simulation

NeuroSIM

Interactive visualization of neural architecture from brain networks down to individual synapses and molecular machinery. Navigate five zoom levels — network, cortical layers, neuron morphology, synaptic transmission, and molecular detail. All parameters from published neuroscience literature.

Network

Brain regions & functional networks~15 cm

Drag to rotate · Scroll to zoom

Data Sources

  • Pyramidal neuron morphology: PMC11094408 (2024)
  • Dendritic spine clustering: PMC6060563 (PLOS Computational Biology)
  • Action potential physiology: StatPearls NBK538143
  • Cortical microcircuit: Blue Brain Project NMC Portal (EPFL)
  • Synaptic vesicle dynamics: PMC8054220
  • SNARE complex: PMC3570063
  • Receptor kinetics: StatPearls NBK519495
  • Network organization: Human Connectome Project

Simulation parameters are simplified for visualization. Biophysical models with full Hodgkin-Huxley dynamics are available in NEURON simulator (ModelDB) and the Blue Brain Project portal.